PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001446m
Common NameCARUB_v10001446mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 327aa    MW: 35213.1 Da    PI: 7.4685
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001446mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.5e-31155213259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dpk++++tY+ eHnh+
  Carubv10001446m 155 SDVWAWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPKMFIVTYTAEHNHP 213
                      69************************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-30144215IPR003657WRKY domain
PROSITE profilePS5081136.77149215IPR003657WRKY domain
SuperFamilySSF1182904.58E-26151215IPR003657WRKY domain
SMARTSM007748.4E-36154214IPR003657WRKY domain
PfamPF031068.1E-26156213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
CLLWLLSSLL RDSKLLSTPE LPNSMADDWD LHAVVRGCSA VSSSATTSTT TVFSGGVSSH  60
TNPTFTVGRQ SNAVSFGEIR DLYTPFTQES VVSSFSCLNY PEEPRKTQNQ KRPLSLSASS  120
GSVTSKPTGS TTSRSKRRKI QHKKVCHVAA EALNSDVWAW RKYGQKPIKG SPYPRGYYRC  180
STSKGCLARK QVERNRSDPK MFIVTYTAEH NHPAPTHRNS LAGSTRQKPS DQPMTTKSPT  240
TTIATYSSSP VTSADEFVLP VEDLAVGEGL DGDEDLLSLS DTVVSDDFFD GLEEFAAGDS  300
FSGNSAPACF DLSWVVNSAA TTTGGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A3e-181532151677Probable WRKY transcription factor 4
1wj2_A3e-181532151677Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1667200.0AY166720.1 Capsella rubella WRKY transcription factor 22 (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288206.10.0hypothetical protein CARUB_v10001446mg, partial
SwissprotO046090.0WRK22_ARATH; WRKY transcription factor 22
TrEMBLR0GW210.0R0GW21_9BRAS; Uncharacterized protein (Fragment)
STRINGAT4G01250.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78102741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-175WRKY family protein